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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
112
single cell RNA-seq
85
RNA microarray
72
ATAC-seq
6
snATAC-seq
3
snDrop-seq
1
Hi-C
Assay category
605
Transcription
78
DNA accessibility
1
3D chromatin structure
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
550
tsv
452
bam
444
bigWig
146
txt
72
bed narrowPeak
64
xls
6
csv
1
hic
Organism
771
Homo sapiens
Biosample type
772
tissue
112
cell line
68
in vitro differentiated cells
46
primary cell
Organ
445
connective tissue
387
adipose tissue
150
bone element
136
kidney
92
heart
8
skeleton
6
blood vessel
6
limb
6
vasculature
2
artery
pancreas
1
liver
Project
772
AMP
Genome assembly (visualization)
516
GRCh38
453
hg19
Lab
644
AMP-T2D consortium
128
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
5
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
772 results
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total RNA-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
snDrop-seq
Hi-C
tissue
adipose tissue
381
kidney
49
13
64
6
1
bone element
84
bone tissue
58
heart left ventricle
18
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