Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
106
single cell RNA-seq
68
ATAC-seq
50
total RNA-seq
6
snATAC-seq
3
Hi-C
1
RNA microarray
Assay category
156
Transcription
115
DNA binding
74
DNA accessibility
3
3D chromatin structure
Target of assay
89
histone
89
histone modification
56
broad histone mark
33
narrow histone mark
22
control
4
RNA binding protein
4
transcription factor
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
157
bed narrowPeak
116
bam
99
tsv
93
bigBed narrowPeak
93
bigWig
64
xls
57
txt
2
hic
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
fastq
Organism
348
Homo sapiens
Biosample type
349
tissue
44
cell line
42
in vitro differentiated cells
9
primary cell
Organ
128
kidney
113
heart
56
blood vessel
56
vasculature
28
brain
9
pancreas
7
artery
7
limb
7
musculature of body
1
adipose tissue
1
connective tissue
Project
349
AMP
Genome assembly (visualization)
158
GRCh38
97
hg19
Lab
214
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
BIOSAMPLE
ASSAY
349 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 20 more…
See all biosamples
Download