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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
102
ATAC-seq
76
total RNA-seq
7
snATAC-seq
2
Hi-C
Assay category
183
Transcription
109
DNA accessibility
2
3D chromatin structure
Date released
241
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
102
bed narrowPeak
99
tsv
64
txt
64
xls
24
bam
24
fastq
20
bigWig
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
294
Homo sapiens
Biosample type
294
tissue
138
primary cell
44
cell line
42
in vitro differentiated cells
Organ
128
kidney
92
heart
40
liver
26
pancreas
6
blood vessel
6
vasculature
2
artery
2
musculature of body
adipose tissue
1
connective tissue
Project
294
AMP
Genome assembly (visualization)
64
GRCh38
40
hg19
Lab
128
Katalin Susztak, Upenn
100
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
1
audit script error
month_released!
July, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
294 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
tissue
kidney
8
64
49
6
1
liver
20
20
islet of Langerhans
18
7
1
heart left ventricle
18
left cardiac atrium
18
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