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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
50
total RNA-seq
25
ChIP-seq
6
snATAC-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
70
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
99
tsv
89
bed narrowPeak
64
xls
57
txt
25
bigWig
1
bedpe bed3+
1
hic
Organism
253
Homo sapiens
Biosample type
254
tissue
42
cell line
35
in vitro differentiated cells
2
primary cell
Organ
128
kidney
117
heart
6
blood vessel
6
vasculature
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
254
AMP
Genome assembly (visualization)
89
GRCh38
1
hg19
Lab
128
Katalin Susztak, Upenn
99
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
254 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
left cardiac atrium
18
25
heart left ventricle
18
right cardiac atrium
18
heart right ventricle
17
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