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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
82
ChIP-seq
64
ATAC-seq
50
total RNA-seq
6
snATAC-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
82
DNA binding
70
DNA accessibility
2
3D chromatin structure
Target of assay
70
histone
70
histone modification
42
broad histone mark
28
narrow histone mark
12
control
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
March, 2020
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
122
bed narrowPeak
99
tsv
69
bam
66
tagAlign
64
xls
57
bigBed narrowPeak
57
bigWig
57
txt
6
bed broadPeak
1
bedpe bed3+
1
hic
Organism
310
Homo sapiens
Biosample type
359
cell line
311
tissue
42
in vitro differentiated cells
13
primary cell
Organ
128
kidney
92
heart
82
brain
6
blood vessel
6
vasculature
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
311
AMP
Genome assembly (visualization)
121
GRCh38
7
hg19
Lab
181
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
month_released!
February, 2021
organ_slims!
thymus
BIOSAMPLE
ASSAY
311 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
layer of hippocampus
22
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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