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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
21
total RNA-seq
15
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
1
snATAC-seq
Assay category
111
DNA binding
21
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
91
histone
91
histone modification
55
narrow histone mark
36
broad histone mark
20
control
Date released
545
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
103
bam
84
bigWig
76
bed narrowPeak
47
bigBed narrowPeak
11
tagAlign
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
157
Homo sapiens
Biosample type
157
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
4
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
157
AMP
Genome assembly (visualization)
85
hg19
83
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
14
12
4
1
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
liver
5
1
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