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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
28
total RNA-seq
22
ATAC-seq
20
pCHi-C
8
Hi-C
Assay category
48
DNA binding
28
Transcription
22
DNA accessibility
8
3D chromatin structure
Target of assay
31
transcription factor
12
control
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
94
bam
64
bigWig
56
bed narrowPeak
47
tsv
46
fastq
34
bigBed narrowPeak
8
bedpe bed3+
8
hic
Organism
126
Homo sapiens
Biosample type
126
tissue
54
in vitro differentiated cells
26
cell line
7
stem cell
1
primary cell
Organ
49
liver
48
pancreas
7
heart
5
musculature of body
3
blood vessel
3
vasculature
2
adipose tissue
2
brain
2
connective tissue
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
122
AMP
4
T1D
Genome assembly (visualization)
92
hg19
82
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
27
inconsistent control
3
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
2
21
21
1
liver
37
1
1
1
right lobe of liver
9
psoas muscle
2
1
2
aorta
1
1
1
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