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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
19
pCHi-C
10
ATAC-seq
9
total RNA-seq
7
Hi-C
Assay category
65
DNA binding
10
DNA accessibility
9
Transcription
7
3D chromatin structure
Target of assay
31
transcription factor
19
histone
19
histone modification
15
control
13
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
March, 2020
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
72
bam
65
fastq
61
bigWig
50
bed narrowPeak
42
bigBed narrowPeak
27
tsv
14
tagAlign
7
bedpe bed3+
7
hic
4
bed broadPeak
Organism
110
Homo sapiens
Biosample type
110
tissue
51
in vitro differentiated cells
11
cell line
7
stem cell
1
primary cell
Organ
51
liver
18
brain
14
pancreas
7
heart
5
musculature of body
3
blood vessel
3
vasculature
2
adipose tissue
2
connective tissue
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
stomach
thymus
1
urinary bladder
Project
106
AMP
4
T1D
Genome assembly (visualization)
67
hg19
59
GRCh38
Lab
109
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
thymus
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
pCHi-C
ATAC-seq
total RNA-seq
Hi-C
tissue
liver
38
1
1
1
brain
15
right lobe of liver
10
islet of Langerhans
2
3
2
psoas muscle
1
2
2
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