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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
24
ATAC-seq
22
total RNA-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
217
DNA binding
28
DNA accessibility
22
Transcription
1
3D chromatin structure
Target of assay
180
histone
180
histone modification
131
narrow histone mark
49
broad histone mark
34
control
3
transcription factor
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
208
bam
177
bigWig
166
bed narrowPeak
63
tagAlign
56
bigBed narrowPeak
24
fastq
8
bed broadPeak
8
tsv
4
bed bed3+
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
272
Homo sapiens
Biosample type
272
tissue
58
cell line
34
primary cell
8
in vitro differentiated cells
Organ
102
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
8
pancreas
8
spleen
6
liver
4
gonad
4
kidney
4
ovary
3
connective tissue
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
272
AMP
Genome assembly (visualization)
179
hg19
178
GRCh38
Lab
271
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
14
4
tibial nerve
35
1
4
2
tibial artery
23
1
2
brain
20
1
heart
5
2
1
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