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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
pCHi-C
12
ChIP-seq
9
DNase-seq
9
total RNA-seq
7
Hi-C
6
WGBS
2
ATAC-seq
1
FAIRE-seq
Assay category
12
DNA accessibility
12
DNA binding
9
Transcription
7
3D chromatin structure
6
DNA methylation
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
35
bam
34
bigWig
28
tsv
26
fastq
19
bed narrowPeak
17
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
72
cell line
66
tissue
8
in vitro differentiated cells
4
stem cell
2
primary cell
Organ
16
pancreas
10
liver
10
spleen
7
heart
5
musculature of body
4
brain
3
blood vessel
3
vasculature
2
adipose tissue
2
connective tissue
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
62
AMP
4
T1D
Genome assembly (visualization)
35
hg19
31
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
May, 2023
month_released!!
May, 2023
BIOSAMPLE
ASSAY
66 results
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pCHi-C
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
tissue
spleen
1
6
1
2
liver
1
4
2
1
1
islet of Langerhans
2
2
2
pancreas
1
1
1
2
1
psoas muscle
1
2
2
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