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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
65
total RNA-seq
38
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
66
Transcription
39
DNA accessibility
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
136
bam
103
bigWig
83
bed narrowPeak
82
fastq
45
bigBed narrowPeak
38
tsv
7
txt
1
bed bed3+
Organism
180
Homo sapiens
Biosample type
342
primary cell
180
tissue
132
in vitro differentiated cells
21
cell line
Organ
112
pancreas
40
liver
23
adipose tissue
23
connective tissue
2
heart
2
musculature of body
1
thymus
Project
179
AMP
1
T1D
Genome assembly (visualization)
122
hg19
83
GRCh38
Lab
114
AMP-T2D consortium
40
Karen Mohlke, UNC
26
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
month_released!
June, 2019
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
42
18
liver
20
20
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
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