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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
21
total RNA-seq
14
ATAC-seq
4
pCHi-C
2
DNase-seq
1
Hi-C
Assay category
88
DNA binding
21
Transcription
16
DNA accessibility
1
3D chromatin structure
Target of assay
73
histone
73
histone modification
51
narrow histone mark
22
broad histone mark
15
control
Date released
545
February, 2021
284
August, 2017
223
August, 2021
193
May, 2020
135
June, 2019
130
October, 2019
120
July, 2018
80
April, 2019
74
October, 2018
66
May, 2022
59
February, 2023
59
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
May, 2019
35
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
10
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
77
bam
63
bigWig
55
bed narrowPeak
27
bigBed narrowPeak
11
tagAlign
7
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
130
Homo sapiens
Biosample type
130
tissue
30
cell line
13
primary cell
8
in vitro differentiated cells
Organ
brain
69
limb
42
nerve
26
artery
26
blood vessel
vasculature
21
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
130
AMP
Genome assembly (visualization)
64
hg19
62
GRCh38
Lab
130
AMP-T2D consortium
organ_slims!
brain
vasculature
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
tissue
islet of Langerhans
21
14
12
4
tibial nerve
35
4
1
2
heart
5
2
1
liver
5
1
kidney
4
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