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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
659
ChIP-seq
464
total RNA-seq
232
ATAC-seq
179
single cell RNA-seq
171
DNase-seq
86
RNA microarray
28
snATAC-seq
22
pCHi-C
15
Hi-C
15
WGBS
11
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
659
DNA binding
654
Transcription
435
DNA accessibility
25
DNA methylation
15
3D chromatin structure
Target of assay
520
histone
520
histone modification
266
narrow histone mark
254
broad histone mark
109
control
32
transcription factor
21
RNA binding protein
2
nucleotide modification
Date released
235
October, 2019
228
August, 2021
173
August, 2017
162
June, 2019
158
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
59
July, 2019
51
October, 2018
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
35
March, 2020
26
May, 2022
22
February, 2020
21
October, 2017
19
April, 2020
14
May, 2023
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1155
bam
1068
bigWig
844
bed narrowPeak
522
tsv
489
bigBed narrowPeak
227
fastq
206
bed broadPeak
192
bed bed3+
170
bigBed broadPeak
160
tagAlign
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1895
Homo sapiens
Biosample type
1903
tissue
1072
primary cell
378
in vitro differentiated cells
261
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1806
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1183
GRCh38
1049
hg19
Lab
1591
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
liver
spleen
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
1903 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
1
7
4
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
4
1
left cardiac atrium
40
18
1
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