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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
761
ChIP-seq
743
total RNA-seq
197
ATAC-seq
173
single cell RNA-seq
139
DNase-seq
87
RNA microarray
22
WGBS
21
pCHi-C
16
snATAC-seq
13
small RNA-seq
6
Hi-C
5
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
929
Transcription
761
DNA binding
354
DNA accessibility
27
DNA methylation
6
3D chromatin structure
Target of assay
530
histone modification
529
histone
283
narrow histone mark
246
broad histone mark
154
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
127
June, 2019
111
August, 2017
106
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
64
July, 2019
48
December, 2017
47
September, 2023
40
May, 2022
40
May, 2024
24
March, 2020
23
October, 2018
22
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
1
January, 2018
1
November, 2019
Available data
1434
bam
1342
bigWig
810
bed narrowPeak
792
tsv
461
bigBed narrowPeak
207
tagAlign
162
fastq
150
txt
148
bed broadPeak
145
bed bed3+
138
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
6
csv
6
hic
5
bed bed3
5
bedpe bed3+
1
tagAlign bed3+
Organism
2186
Homo sapiens
Biosample type
2188
tissue
728
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
2121
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1431
GRCh38
1281
hg19
Lab
1899
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
adrenal gland
musculature of body
pancreas
urinary bladder
BIOSAMPLE
ASSAY
2188 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
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