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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
611
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1118
Transcription
611
DNA binding
404
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
532
histone modification
531
histone
285
narrow histone mark
246
broad histone mark
control
82
transcription factor
18
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
255
August, 2017
206
October, 2019
170
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
78
May, 2019
70
November, 2017
66
May, 2022
59
February, 2023
57
July, 2019
47
September, 2023
45
October, 2018
40
November, 2019
38
May, 2021
36
December, 2017
33
March, 2020
22
February, 2020
20
November, 2018
20
October, 2017
19
April, 2019
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1621
bam
1612
bigWig
965
tsv
808
bed narrowPeak
470
bigBed narrowPeak
307
fastq
186
bed broadPeak
186
tagAlign
175
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2281
Homo sapiens
Biosample type
2289
tissue
1042
primary cell
513
cell line
356
in vitro differentiated cells
9
stem cell
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
14
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2192
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1662
GRCh38
1636
hg19
Lab
1979
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
lymph node
target.investigated_as!
control
other context
BIOSAMPLE
ASSAY
2289 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
57
68
1
6
7
4
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
102
20
2
1
1
3
1
1
1
kidney
49
21
75
13
64
6
1
1
1
bone element
84
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