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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
806
total RNA-seq
693
ChIP-seq
163
ATAC-seq
114
single cell RNA-seq
85
RNA microarray
74
DNase-seq
23
pCHi-C
22
WGBS
21
snATAC-seq
11
small RNA-seq
8
Hi-C
5
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
931
Transcription
693
DNA binding
261
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
513
histone
513
histone modification
261
narrow histone mark
252
broad histone mark
131
control
54
transcription factor
25
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
536
February, 2021
232
October, 2019
204
August, 2017
120
July, 2018
108
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
74
October, 2018
63
June, 2019
58
July, 2019
57
April, 2019
40
May, 2021
40
May, 2024
40
November, 2019
32
March, 2020
24
May, 2022
23
October, 2017
22
February, 2020
19
April, 2020
16
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
August, 2022
1
January, 2018
1
May, 2023
Available data
1474
bam
1356
bigWig
903
tsv
664
bed narrowPeak
384
bigBed narrowPeak
289
fastq
153
tagAlign
98
bed bed3+
97
bed broadPeak
94
txt
73
bigBed broadPeak
20
bed bedMethyl
20
bigBed bedMethyl
7
bedpe bed3+
7
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2023
Homo sapiens
Biosample type
2032
tissue
1024
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1982
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1411
GRCh38
1331
hg19
Lab
1909
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
kidney
liver
musculature of body
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2032 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
DNase-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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