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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
811
total RNA-seq
697
ChIP-seq
164
ATAC-seq
115
single cell RNA-seq
106
DNase-seq
85
RNA microarray
24
pCHi-C
23
WGBS
22
snATAC-seq
14
Hi-C
12
small RNA-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
938
Transcription
697
DNA binding
295
DNA accessibility
32
DNA methylation
14
3D chromatin structure
Target of assay
538
histone
538
histone modification
270
narrow histone mark
268
broad histone mark
135
control
54
transcription factor
RNA binding protein
other context
3
other post-translational modification
2
nucleotide modification
Date released
536
February, 2021
232
October, 2019
228
August, 2017
120
July, 2018
111
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
65
July, 2019
63
October, 2018
54
April, 2019
40
May, 2021
40
November, 2019
37
March, 2020
35
May, 2024
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
16
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1498
bam
1388
bigWig
910
tsv
691
bed narrowPeak
404
bigBed narrowPeak
278
fastq
168
tagAlign
142
bed broadPeak
129
bed bed3+
105
bigBed broadPeak
95
txt
23
bed bedMethyl
23
bigBed bedMethyl
9
bedpe bed3+
9
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2080
Homo sapiens
Biosample type
2089
tissue
1030
primary cell
370
in vitro differentiated cells
231
cell line
10
stem cell
Organ
542
connective tissue
497
pancreas
483
adipose tissue
liver
303
heart
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2039
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1428
GRCh38
1372
hg19
Lab
1971
AMP-T2D consortium
52
Kyle Gaulton, UCSD
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
2
audit script error
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
kidney
liver
target.investigated_as!
RNA binding protein
other context
BIOSAMPLE
ASSAY
2089 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
69
68
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
bone element
84
heart left ventricle
3
32
2
18
3
1
4
1
1
bone tissue
58
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