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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 981total RNA-seq
  • 880ChIP-seq
  • 185ATAC-seq
  • 116single cell RNA-seq
  • 110DNase-seq
  • 85RNA microarray
  • 27WGBS
  • 25pCHi-C
  • 22snATAC-seq
  • 15Hi-C
  • 15small RNA-seq
  • 10RRBS
  • 4MeRIP-seq
  • 3FAIRE-seq
Assay category
  • 1112Transcription
  • 880DNA binding
  • 320DNA accessibility
  • 37DNA methylation
  • 153D chromatin structure
Target of assay
  • 608histone modification
  • 607histone
  • 314narrow histone mark
  • 293broad histone mark
  • 181control
  • 93transcription factor
  • 27RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 537February, 2021
  • 284August, 2017
  • 238October, 2019
  • 193May, 2020
  • 120July, 2018
  • 115May, 2019
  • 101August, 2021
  • 95February, 2023
  • 95June, 2019
  • 82November, 2017
  • 74October, 2018
  • 73July, 2019
  • 66May, 2022
  • 57April, 2019
  • 48December, 2017
  • 40March, 2020
  • 40May, 2021
  • 40May, 2024
  • 40November, 2019
  • 26November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4November, 2020
  • 2January, 2018
  • 1August, 2022
  • 1May, 2023
Available data
  • 1809bam
  • 1681bigWig
  • 1064tsv
  • 831bed narrowPeak
  • 474bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 145bed broadPeak
  • 137bed bed3+
  • 108bigBed broadPeak
  • 95txt
  • 24bed bedMethyl
  • 24bigBed bedMethyl
  • 10bedpe bed3+
  • 10hic
  • 5bed bed3
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 2469Homo sapiens
Biosample type
  • 2478tissue
  • 1052primary cell
  • 643cell line
  • 394in vitro differentiated cells
  • 10stem cell
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 82musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2428AMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 1694GRCh38
  • 1663hg19
Lab
  • 2315AMP-T2D consortium
  • 52Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 91inconsistent ontology term
  • 27inconsistent control
  • 2audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • kidney
BIOSAMPLE
ASSAY

2478 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans292716861473141
adipose tissue3822331
liver167145201231111
bone element84
heart left ventricle33521834111
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