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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 861total RNA-seq
  • 752ChIP-seq
  • 239ATAC-seq
  • 179single cell RNA-seq
  • 174DNase-seq
  • 87RNA microarray
  • 29snATAC-seq
  • 24pCHi-C
  • 23WGBS
  • 15Hi-C
  • 13small RNA-seq
  • 10RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 1053Transcription
  • 752DNA binding
  • 446DNA accessibility
  • 33DNA methylation
  • 153D chromatin structure
Target of assay
  • 558histone
  • 558histone modification
  • 280narrow histone mark
  • 278broad histone mark
  • 141control
  • 55transcription factor
  • 26RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 544February, 2021
  • 236October, 2019
  • 230August, 2017
  • 229August, 2021
  • 163June, 2019
  • 120July, 2018
  • 115May, 2019
  • 95February, 2023
  • 82November, 2017
  • 80April, 2019
  • 74October, 2018
  • 69July, 2019
  • 47September, 2023
  • 40May, 2021
  • 40May, 2024
  • 40November, 2019
  • 37March, 2020
  • 26May, 2022
  • 24February, 2020
  • 23October, 2017
  • 19April, 2020
  • 19November, 2018
  • 15May, 2023
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
  • 1July, 2025
Available data
  • 1619bam
  • 1507bigWig
  • 923tsv
  • 871bed narrowPeak
  • 512bigBed narrowPeak
  • 294fastq
  • 210bed broadPeak
  • 200bed bed3+
  • 173bigBed broadPeak
  • 168tagAlign
  • 157txt
  • 64xls
  • 24bed bedMethyl
  • 24bigBed bedMethyl
  • 10hic
  • 9bedpe bed3+
  • 5bed bed3
  • 5csv
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2407Homo sapiens
Biosample type
  • 2417tissue
  • 1074primary cell
  • 379in vitro differentiated cells
  • 261cell line
  • 10stem cell
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • liver
  • 313heart
  • 299kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 83musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2320AMP
  • 47KPMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 1622GRCh38
  • 1487hg19
Lab
  • 2104AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 2Stephen Parker, UMich
  • 1Maike Sander, UCSD
Audit category:
  • 91inconsistent ontology term
  • 9audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2417 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans292716861743114
adipose tissue3822313
kidney49277564136111
bone element84
heart left ventricle33521831411
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