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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
260
ChIP-seq
222
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
86
RNA microarray
27
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
426
DNA accessibility
260
DNA binding
36
DNA methylation
15
3D chromatin structure
Target of assay
568
histone modification
histone
304
narrow histone mark
263
broad histone mark
170
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
222
August, 2021
166
May, 2020
160
August, 2017
160
June, 2019
120
July, 2018
70
July, 2019
66
May, 2022
66
October, 2019
60
February, 2023
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
22
February, 2020
20
April, 2019
18
April, 2020
15
May, 2023
12
May, 2019
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1408
bam
1235
bigWig
1062
tsv
419
bed narrowPeak
303
fastq
241
bigBed narrowPeak
188
bed bed3+
173
bed broadPeak
171
bigBed broadPeak
157
txt
64
xls
51
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2068
Homo sapiens
Biosample type
2068
tissue
831
primary cell
554
cell line
282
in vitro differentiated cells
6
stem cell
Organ
513
connective tissue
455
adipose tissue
431
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
vasculature
73
limb
57
musculature of body
54
eye
53
artery
19
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1974
AMP
47
KPMP
29
T1D
18
LungMap
Genome assembly (visualization)
1315
GRCh38
1302
hg19
Lab
1752
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
18
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
organ_slims!
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2068 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
1
2
3
1
1
1
1
kidney
49
7
75
64
13
6
1
1
1
bone element
84
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