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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
102
ChIP-seq
34
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
4
RRBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
406
Transcription
102
DNA binding
42
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
57
histone
57
histone modification
36
broad histone mark
28
control
21
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
83
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
484
bam
480
bigWig
406
tsv
64
bed narrowPeak
48
bed broadPeak
48
bigBed narrowPeak
45
fastq
39
bed bed3+
34
bigBed broadPeak
23
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
569
Homo sapiens
Biosample type
570
tissue
16
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
570
AMP
Genome assembly (visualization)
485
hg19
464
GRCh38
Lab
570
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
organ_slims!
large intestine
lymph node
BIOSAMPLE
ASSAY
570 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
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