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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 2DNase-seq
  • 2small RNA-seq
  • 1RNA microarray
  • 1pCHi-C
Assay category
  • 399Transcription
  • 73DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 57August, 2017
  • 23October, 2018
  • 10July, 2019
  • 2February, 2020
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 440bam
  • 423bigWig
  • 399tsv
  • 43fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
Organism
  • 487Homo sapiens
Biosample type
  • 488tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • 299kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 82musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 488AMP
Genome assembly (visualization)
  • 424hg19
  • 422GRCh38
Lab
  • 488AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
BIOSAMPLE
ASSAY

488 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
white adipose tissue12
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