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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
93
single cell RNA-seq
40
ATAC-seq
29
DNase-seq
20
total RNA-seq
8
WGBS
4
pCHi-C
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
158
DNA binding
114
Transcription
69
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
119
histone
119
histone modification
73
broad histone mark
46
narrow histone mark
27
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
50
October, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
March, 2020
4
February, 2020
2
May, 2021
Available data
200
bed narrowPeak
188
bigWig
174
bam
117
tsv
114
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
357
Homo sapiens
Biosample type
357
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
357
AMP
Genome assembly (visualization)
222
GRCh38
144
hg19
Lab
317
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
BIOSAMPLE
ASSAY
357 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
tibial nerve
35
1
2
5
heart
14
1
18
4
1
1
1
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