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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
30
ChIP-seq
21
total RNA-seq
7
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
72
DNA accessibility
30
DNA binding
23
Transcription
Target of assay
22
histone
22
histone modification
14
broad histone mark
8
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
66
February, 2023
47
October, 2019
5
June, 2019
5
May, 2019
3
February, 2020
2
August, 2021
1
July, 2019
Available data
92
bed narrowPeak
37
bam
30
bigWig
28
bigBed narrowPeak
9
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
129
tissue
66
cell line
7
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
65
GRCh38
57
hg19
Lab
129
AMP-T2D consortium
organ_slims!
blood
BIOSAMPLE
ASSAY
129 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
36
5
1
2
tibial artery
1
23
1
2
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
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