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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
single cell RNA-seq
150
ChIP-seq
114
ATAC-seq
95
DNase-seq
65
total RNA-seq
8
WGBS
6
snATAC-seq
4
Hi-C
3
pCHi-C
3
snDrop-seq
2
RNA microarray
2
RRBS
2
small RNA-seq
1
FAIRE-seq
Assay category
224
Transcription
216
DNA accessibility
150
DNA binding
10
DNA methylation
4
3D chromatin structure
Target of assay
115
histone
115
histone modification
67
broad histone mark
48
narrow histone mark
22
control
13
transcription factor
11
RNA binding protein
Date released
220
August, 2021
95
June, 2019
80
April, 2019
47
September, 2023
40
May, 2024
36
February, 2023
24
July, 2019
21
May, 2019
14
May, 2023
12
October, 2019
8
February, 2021
7
March, 2020
3
December, 2019
3
February, 2020
2
May, 2021
Available data
326
bed narrowPeak
248
bigWig
230
bam
175
bigBed narrowPeak
123
tsv
95
bed bed3+
95
bed broadPeak
95
bigBed broadPeak
64
xls
62
txt
8
bed bedMethyl
8
bigBed bedMethyl
5
csv
4
hic
3
bedpe bed3+
Organism
612
Homo sapiens
Biosample type
612
tissue
146
cell line
57
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
blood
Project
565
AMP
47
KPMP
Genome assembly (visualization)
356
GRCh38
205
hg19
Lab
383
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
Audit category:
7
audit script error
organ_slims!
gonad
BIOSAMPLE
ASSAY
612 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
pCHi-C
snDrop-seq
RNA microarray
RRBS
small RNA-seq
FAIRE-seq
tissue
kidney
64
27
75
13
49
6
1
1
1
heart left ventricle
18
35
2
3
3
4
1
1
1
left cardiac atrium
18
40
1
coronary artery
5
36
2
1
heart
1
14
18
4
1
1
1
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