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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
73
ChIP-seq
69
total RNA-seq
50
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
75
Transcription
73
DNA binding
55
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
50
May, 2019
43
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
153
bam
128
bigWig
108
bed narrowPeak
88
txt
72
tsv
62
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
291
Homo sapiens
Biosample type
291
tissue
66
cell line
32
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
291
AMP
Genome assembly (visualization)
171
GRCh38
140
hg19
Lab
291
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
organ_slims!
eye
BIOSAMPLE
ASSAY
291 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
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