Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
70
ChIP-seq
69
total RNA-seq
50
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
75
Transcription
70
DNA binding
55
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
RNA binding protein
3
transcription factor
Date released
150
February, 2021
47
May, 2019
43
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
150
bam
125
bigWig
105
bed narrowPeak
88
txt
72
tsv
59
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
288
Homo sapiens
Biosample type
288
tissue
66
cell line
31
primary cell
Organ
542
connective tissue
497
pancreas
483
adipose tissue
359
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
288
AMP
Genome assembly (visualization)
168
GRCh38
137
hg19
Lab
288
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
organ_slims!
urinary bladder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
288 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
4
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
+ See 15 more…
See all biosamples
Download