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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
45
ATAC-seq
39
DNase-seq
13
total RNA-seq
6
single cell RNA-seq
5
Hi-C
3
WGBS
3
pCHi-C
Assay category
116
DNA binding
84
DNA accessibility
19
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
85
histone
85
histone modification
56
broad histone mark
29
narrow histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
69
October, 2019
57
May, 2019
35
February, 2023
35
June, 2019
12
July, 2019
6
August, 2021
6
February, 2021
5
February, 2020
4
March, 2020
1
May, 2021
Available data
175
bam
171
bed narrowPeak
140
bigWig
126
bigBed narrowPeak
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
21
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
230
Homo sapiens
Biosample type
230
tissue
66
cell line
31
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
1
T1D
Genome assembly (visualization)
180
GRCh38
145
hg19
Lab
229
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
BIOSAMPLE
ASSAY
230 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
36
2
1
tibial nerve
35
1
2
5
tibial artery
23
1
2
1
aorta
13
1
4
1
2
1
muscle of leg
7
13
1
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