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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
177
total RNA-seq
60
ATAC-seq
9
DNase-seq
7
single cell RNA-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
229
DNA binding
187
Transcription
69
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
125
histone modification
124
histone
63
narrow histone mark
62
control
61
broad histone mark
42
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
50
May, 2019
48
December, 2017
40
May, 2022
35
February, 2023
34
October, 2019
15
July, 2019
7
November, 2018
6
August, 2021
6
March, 2020
4
February, 2020
3
June, 2019
1
February, 2021
Available data
376
bam
336
bigWig
214
bed narrowPeak
168
tsv
111
bigBed narrowPeak
83
fastq
71
tagAlign
11
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
Organism
496
Homo sapiens
Biosample type
496
tissue
467
cell line
44
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
496
AMP
Genome assembly (visualization)
344
GRCh38
339
hg19
Lab
456
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
thymus
BIOSAMPLE
ASSAY
496 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
RRBS
tissue
liver
145
167
20
2
1
3
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
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