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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
total RNA-seq
155
ChIP-seq
84
RNA microarray
33
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
236
Transcription
155
DNA binding
37
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
151
February, 2021
54
August, 2017
48
December, 2017
40
May, 2022
8
February, 2023
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
Available data
354
bam
323
bigWig
212
tsv
121
bed narrowPeak
88
txt
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
4
bed bed3
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
519
Homo sapiens
Biosample type
519
tissue
401
cell line
15
in vitro differentiated cells
15
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
519
AMP
Genome assembly (visualization)
338
hg19
304
GRCh38
Lab
479
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
84
inconsistent ontology term
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
ureter
BIOSAMPLE
ASSAY
519 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
3
10
1
2
1
2
acetabular part of hip bone
1
1
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