Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
139
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
broad histone mark
25
control
Date released
83
October, 2019
40
November, 2017
25
June, 2019
13
May, 2019
12
February, 2020
11
July, 2019
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
165
bam
142
bigWig
131
bed narrowPeak
73
tagAlign
58
bigBed narrowPeak
32
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
6
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
195
Homo sapiens
Biosample type
195
tissue
21
primary cell
Organ
527
connective tissue
468
adipose tissue
464
pancreas
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
195
AMP
Genome assembly (visualization)
142
GRCh38
118
hg19
Lab
195
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
liver
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
195 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
See all biosamples
Download