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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
36
total RNA-seq
33
ATAC-seq
30
DNase-seq
6
pCHi-C
4
small RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
211
DNA binding
64
DNA accessibility
40
Transcription
1
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
25
control
Date released
108
October, 2019
82
November, 2017
32
February, 2023
28
June, 2019
28
May, 2019
16
October, 2017
13
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
Available data
229
bam
222
bed narrowPeak
205
bigWig
119
bigBed narrowPeak
118
tagAlign
39
bed broadPeak
30
bed bed3+
30
bigBed broadPeak
28
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
322
Homo sapiens
Biosample type
322
tissue
26
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
322
AMP
Genome assembly (visualization)
206
GRCh38
173
hg19
Lab
322
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
322 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
FAIRE-seq
RRBS
tissue
brain
20
1
1
14
1
islet of Langerhans
2
14
3
4
layer of hippocampus
23
retina
3
15
3
caudate nucleus
15
1
1
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