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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
187
total RNA-seq
31
DNase-seq
25
ATAC-seq
7
small RNA-seq
4
WGBS
3
pCHi-C
2
RRBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
269
DNA binding
195
Transcription
57
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
254
histone modification
253
histone
158
narrow histone mark
broad histone mark
71
control
39
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
86
October, 2019
45
December, 2017
40
May, 2022
40
November, 2017
35
August, 2017
25
June, 2019
19
July, 2019
13
February, 2020
13
May, 2019
9
November, 2018
6
October, 2017
5
March, 2020
1
February, 2021
1
February, 2023
Available data
440
bam
394
bigWig
231
bed narrowPeak
177
tsv
132
tagAlign
100
bigBed narrowPeak
79
fastq
35
bed broadPeak
33
bed bed3+
30
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
1
tagAlign bed3+
Organism
531
Homo sapiens
Biosample type
531
tissue
392
cell line
34
primary cell
8
in vitro differentiated cells
Organ
527
connective tissue
468
adipose tissue
464
pancreas
336
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
531
AMP
Genome assembly (visualization)
373
hg19
367
GRCh38
Lab
491
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
gonad
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
531 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
pCHi-C
RRBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
liver
123
167
2
20
1
3
1
1
1
1
brain
7
1
14
1
1
right lobe of liver
7
3
2
1
2
1
layer of hippocampus
11
caudate nucleus
7
1
1
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