Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
96
ChIP-seq
35
ATAC-seq
8
WGBS
6
DNase-seq
6
pCHi-C
2
RNA microarray
2
small RNA-seq
Assay category
476
Transcription
96
DNA binding
41
DNA accessibility
8
DNA methylation
Target of assay
41
histone
41
histone modification
32
control
24
broad histone mark
23
transcription factor
17
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
23
October, 2019
10
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
4
June, 2019
3
February, 2020
2
March, 2020
2
October, 2017
1
August, 2021
1
December, 2019
1
January, 2018
1
May, 2023
1
November, 2019
Available data
525
bam
500
bigWig
464
tsv
67
fastq
57
bed narrowPeak
26
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
628
Homo sapiens
Biosample type
629
tissue
445
primary cell
121
in vitro differentiated cells
79
cell line
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
629
AMP
Genome assembly (visualization)
526
hg19
499
GRCh38
Lab
629
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
629 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
small RNA-seq
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
spleen
20
1
2
1
1
islet of Langerhans
14
3
1
4
+ See 8 more…
See all biosamples
Download