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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
total RNA-seq
197
ChIP-seq
93
single cell RNA-seq
45
ATAC-seq
29
DNase-seq
14
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
566
Transcription
197
DNA binding
74
DNA accessibility
15
DNA methylation
3
3D chromatin structure
Target of assay
128
histone
128
histone modification
77
broad histone mark
51
narrow histone mark
40
control
29
transcription factor
15
RNA binding protein
Date released
444
February, 2021
93
August, 2021
57
April, 2019
57
August, 2017
40
May, 2024
37
February, 2023
30
July, 2019
28
June, 2019
23
October, 2018
21
May, 2019
10
October, 2019
8
March, 2020
5
February, 2020
2
May, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
638
bigWig
630
bam
568
tsv
186
bed narrowPeak
98
bigBed narrowPeak
43
fastq
33
bed bed3+
30
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
tagAlign
3
bedpe bed3+
3
hic
Organism
859
Homo sapiens
Biosample type
860
tissue
97
in vitro differentiated cells
66
cell line
41
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
860
AMP
Genome assembly (visualization)
671
GRCh38
595
hg19
Lab
820
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
eye
BIOSAMPLE
ASSAY
860 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
3
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
bone tissue
58
coronary artery
1
5
36
2
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