Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
512
total RNA-seq
106
DNase-seq
89
ATAC-seq
65
ChIP-seq
64
single cell RNA-seq
7
WGBS
6
snATAC-seq
5
Hi-C
3
RNA microarray
3
small RNA-seq
3
snDrop-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
579
Transcription
202
DNA accessibility
65
DNA binding
8
DNA methylation
5
3D chromatin structure
Target of assay
histone
102
histone modification
64
broad histone mark
47
control
38
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
458
February, 2021
129
August, 2021
101
June, 2019
47
September, 2023
29
October, 2019
25
August, 2017
23
October, 2018
19
July, 2019
15
May, 2023
5
April, 2019
5
February, 2020
3
December, 2019
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
641
bam
593
bigWig
476
tsv
188
bed narrowPeak
114
bigBed narrowPeak
110
bed bed3+
106
bed broadPeak
106
bigBed broadPeak
64
xls
62
txt
42
fastq
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
1
tagAlign
Organism
865
Homo sapiens
Biosample type
866
tissue
60
in vitro differentiated cells
57
primary cell
19
cell line
1
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
819
AMP
47
KPMP
Genome assembly (visualization)
673
GRCh38
600
hg19
Lab
677
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
2
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
866 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RNA microarray
small RNA-seq
snDrop-seq
FAIRE-seq
RRBS
pCHi-C
tissue
adipose tissue
382
3
1
3
1
kidney
49
13
75
7
64
6
1
1
1
bone tissue
58
subcutaneous adipose tissue
7
1
12
1
1
omental fat pad
5
2
1
11
1
+ See 31 more…
See all biosamples
Download