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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
124
ChIP-seq
35
DNase-seq
9
ATAC-seq
9
WGBS
6
Hi-C
4
RRBS
3
pCHi-C
3
small RNA-seq
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
464
Transcription
124
DNA binding
45
DNA accessibility
13
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
65
histone modification
40
broad histone mark
36
control
25
narrow histone mark
23
transcription factor
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
83
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
7
May, 2019
4
February, 2020
4
October, 2019
2
January, 2018
2
May, 2022
2
October, 2017
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
Available data
567
bam
555
bigWig
465
tsv
79
bed narrowPeak
69
fastq
61
bigBed narrowPeak
49
bed broadPeak
40
bed bed3+
35
bigBed broadPeak
24
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
655
Homo sapiens
Biosample type
656
tissue
97
in vitro differentiated cells
53
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
656
AMP
Genome assembly (visualization)
558
hg19
539
GRCh38
Lab
656
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
656 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
small RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
1
1
spleen
20
1
1
2
1
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