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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
170
total RNA-seq
22
ATAC-seq
6
WGBS
5
DNase-seq
3
pCHi-C
3
small RNA-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
175
DNA binding
174
Transcription
27
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
76
histone modification
75
histone
54
control
46
narrow histone mark
45
transcription factor
29
broad histone mark
3
other context
3
other post-translational modification
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
16
November, 2018
8
July, 2019
7
December, 2018
7
January, 2019
6
October, 2019
5
March, 2020
1
February, 2020
1
February, 2021
1
October, 2017
Available data
312
bam
281
bigWig
156
tsv
127
bed narrowPeak
107
fastq
70
tagAlign
62
bigBed narrowPeak
7
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hic
Organism
387
Homo sapiens
Biosample type
401
cell line
387
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
387
AMP
Genome assembly (visualization)
282
hg19
254
GRCh38
Lab
347
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
145
167
20
3
2
1
1
1
1
1
spleen
20
1
2
1
1
right lobe of liver
10
3
1
1
2
2
esophagus
1
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