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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
16
ChIP-seq
5
pCHi-C
4
DNase-seq
2
WGBS
Assay category
33
DNA accessibility
19
Transcription
16
DNA binding
2
DNA methylation
Target of assay
8
control
8
histone
8
histone modification
transcription factor
4
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
31
February, 2023
21
October, 2019
7
January, 2019
6
November, 2018
4
December, 2018
3
June, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
38
bed narrowPeak
21
bam
18
fastq
13
bigWig
10
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
75
tissue
4
primary cell
Organ
530
connective tissue
488
pancreas
471
adipose tissue
322
liver
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
38
hg19
13
GRCh38
Lab
75
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
WGBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
spleen
1
14
1
1
2
pigmented layer of retina
12
2
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