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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
114
DNA binding
109
Transcription
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
96
histone
96
histone modification
57
broad histone mark
39
narrow histone mark
16
control
12
transcription factor
RNA binding protein
Date released
92
August, 2021
54
April, 2019
36
February, 2023
35
May, 2024
27
June, 2019
20
July, 2019
19
May, 2019
9
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
163
bed narrowPeak
147
bigWig
127
bam
111
tsv
83
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
304
Homo sapiens
Biosample type
304
tissue
66
cell line
12
primary cell
1
in vitro differentiated cells
Organ
542
connective tissue
497
pancreas
483
adipose tissue
359
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
304
AMP
Genome assembly (visualization)
181
GRCh38
108
hg19
Lab
269
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
target.investigated_as!
RNA binding protein
other post-translational modification
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
32
18
2
3
3
4
1
1
1
left cardiac atrium
35
18
1
coronary artery
4
36
2
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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