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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
94
single cell RNA-seq
59
DNase-seq
41
ATAC-seq
19
total RNA-seq
9
Hi-C
9
WGBS
5
RRBS
4
pCHi-C
2
small RNA-seq
1
snATAC-seq
Assay category
153
DNA binding
115
Transcription
101
DNA accessibility
14
DNA methylation
9
3D chromatin structure
Target of assay
121
histone
121
histone modification
73
broad histone mark
48
narrow histone mark
20
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
59
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
28
May, 2019
27
July, 2019
26
August, 2017
12
March, 2020
10
October, 2019
4
February, 2020
2
May, 2021
2
May, 2022
1
January, 2018
Available data
225
bed narrowPeak
215
bigWig
177
bam
126
bigBed narrowPeak
117
tsv
72
bed broadPeak
60
bed bed3+
59
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
bedpe bed3+
5
hic
2
fastq
1
txt
Organism
396
Homo sapiens
Biosample type
396
tissue
66
cell line
27
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
396
AMP
Genome assembly (visualization)
234
GRCh38
175
hg19
Lab
356
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
heart left ventricle
35
18
3
2
3
1
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
2
36
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
1
2
1
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