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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
85
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
85
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
166
May, 2020
43
December, 2017
40
May, 2022
21
August, 2017
8
July, 2019
7
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
1
October, 2019
Available data
238
bam
215
bigWig
154
tsv
65
fastq
63
bed narrowPeak
39
bigBed narrowPeak
26
tagAlign
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
291
Homo sapiens
Biosample type
383
cell line
291
tissue
10
primary cell
3
in vitro differentiated cells
Organ
514
connective tissue
456
adipose tissue
432
pancreas
291
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
291
AMP
Genome assembly (visualization)
218
hg19
196
GRCh38
Lab
251
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
organ_slims!
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
291 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
80
20
2
3
1
1
1
1
1
right lobe of liver
3
5
1
2
1
2
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