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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 170total RNA-seq
  • 155ChIP-seq
  • 21ATAC-seq
  • 4DNase-seq
  • 4WGBS
  • 3small RNA-seq
  • 1Hi-C
  • 1RRBS
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • 174Transcription
  • 155DNA binding
  • 25DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 70histone modification
  • 69histone
  • 46control
  • 44narrow histone mark
  • 39transcription factor
  • 25broad histone mark
  • 2RNA binding protein
  • 2chromatin remodeller
Date released
  • 193May, 2020
  • 54August, 2017
  • 48December, 2017
  • 40May, 2022
  • 8July, 2019
  • 7November, 2018
  • 6October, 2019
  • 3March, 2020
  • 1February, 2020
  • 1February, 2021
Available data
  • 288bam
  • 265bigWig
  • 154tsv
  • 113bed narrowPeak
  • 83fastq
  • 70tagAlign
  • 49bigBed narrowPeak
  • 6bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1csv
  • 1hic
Organism
  • 361Homo sapiens
Biosample type
  • 401cell line
  • 361tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • 299kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 82musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 361AMP
Genome assembly (visualization)
  • 268hg19
  • 238GRCh38
Lab
  • 321AMP-T2D consortium
  • 40Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
Audit category:
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

361 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver167145202311111
right lobe of liver3101212
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