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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
total RNA-seq
138
ChIP-seq
63
ATAC-seq
39
DNase-seq
12
snATAC-seq
10
Hi-C
7
single cell RNA-seq
6
RRBS
5
WGBS
4
MeRIP-seq
3
small RNA-seq
2
FAIRE-seq
2
pCHi-C
Assay category
298
Transcription
138
DNA binding
116
DNA accessibility
11
DNA methylation
10
3D chromatin structure
Target of assay
98
histone
98
histone modification
57
broad histone mark
41
narrow histone mark
33
control
17
transcription factor
RNA binding protein
2
nucleotide modification
Date released
171
August, 2017
120
July, 2018
45
October, 2018
39
November, 2019
37
May, 2021
36
June, 2019
26
May, 2022
18
February, 2023
14
March, 2020
13
July, 2019
9
May, 2019
8
January, 2021
7
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
October, 2017
4
November, 2020
3
February, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
January, 2018
Available data
465
bam
422
bigWig
282
tsv
207
fastq
167
bed narrowPeak
94
bigBed narrowPeak
65
bed broadPeak
58
bed bed3+
38
bigBed broadPeak
31
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
7
txt
5
bedpe bed3+
5
hic
1
bedpe
Organism
572
Homo sapiens
Biosample type
579
tissue
45
primary cell
15
cell line
Organ
542
connective tissue
497
pancreas
483
adipose tissue
359
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
549
AMP
30
T1D
Genome assembly (visualization)
466
hg19
420
GRCh38
Lab
516
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
579 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
Hi-C
single cell RNA-seq
RRBS
WGBS
MeRIP-seq
small RNA-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
278
48
58
1
7
3
6
1
4
1
body of pancreas
3
30
4
4
2
2
skeletal muscle tissue
1
22
1
1
1
4
1
pancreas
2
15
2
4
1
1
2
1
1
muscle of leg
7
13
1
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