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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32DNase-seq
  • 29ChIP-seq
  • 6Hi-C
  • 5total RNA-seq
  • 4RRBS
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1small RNA-seq
  • 1snATAC-seq
Assay category
  • 34DNA accessibility
  • 29DNA binding
  • 7Transcription
  • 63D chromatin structure
  • 5DNA methylation
Target of assay
  • 25histone
  • 25histone modification
  • 16broad histone mark
  • 9narrow histone mark
  • 4control
Date released
  • 32June, 2019
  • 26August, 2017
  • 7July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 57bigWig
  • 51bed narrowPeak
  • 45bed broadPeak
  • 44bam
  • 38bigBed narrowPeak
  • 33bed bed3+
  • 32bigBed broadPeak
  • 15tagAlign
  • 7tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 82Homo sapiens
Biosample type
  • 82tissue
  • 14primary cell
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • 299kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 82musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 82AMP
Genome assembly (visualization)
  • 61hg19
  • 42GRCh38
Lab
  • 82AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

82 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue22141111
muscle of leg1371
muscle of arm17
gastrocnemius medialis41
psoas muscle221
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