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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 283total RNA-seq
  • 117ChIP-seq
  • 62ATAC-seq
  • 11snATAC-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 4Hi-C
  • 4MeRIP-seq
  • 4WGBS
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1pCHi-C
Assay category
  • 291Transcription
  • 117DNA binding
  • 82DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
Target of assay
  • 73histone
  • 73histone modification
  • 41broad histone mark
  • 32narrow histone mark
  • 29control
  • 17transcription factor
  • 8RNA binding protein
  • 2nucleotide modification
Date released
  • 147August, 2017
  • 120July, 2018
  • 51October, 2018
  • 39November, 2019
  • 37May, 2021
  • 24May, 2022
  • 18February, 2023
  • 9March, 2020
  • 8January, 2021
  • 7November, 2018
  • 6April, 2018
  • 6July, 2019
  • 6September, 2017
  • 5March, 2019
  • 5October, 2017
  • 4June, 2019
  • 4November, 2020
  • 3October, 2019
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
Available data
  • 429bam
  • 373bigWig
  • 275tsv
  • 213fastq
  • 123bed narrowPeak
  • 62bigBed narrowPeak
  • 27bed bed3+
  • 20bed broadPeak
  • 16tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6bigBed broadPeak
  • 6txt
  • 3bedpe bed3+
  • 3hic
  • 1bedpe
Organism
  • 498Homo sapiens
Biosample type
  • 505tissue
  • 346primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 547connective tissue
  • 505pancreas
  • 488adipose tissue
  • 361liver
  • 313heart
  • 299kidney
  • 265brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 82musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 475AMP
  • 30T1D
Genome assembly (visualization)
  • 413hg19
  • 386GRCh38
Lab
  • 442AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 1audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

505 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans27850587163411
body of pancreas3354422
pancreas2164212111
endocrine pancreas16
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