Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1027
total RNA-seq
180
single cell RNA-seq
87
RNA microarray
16
small RNA-seq
7
ChIP-seq
4
MeRIP-seq
3
snDrop-seq
1
snATAC-seq
Assay category
1223
Transcription
7
DNA binding
1
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
3
control
2
narrow histone mark
2
nucleotide modification
Date released
537
February, 2021
157
August, 2021
143
May, 2020
120
July, 2018
96
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
27
May, 2022
25
February, 2020
19
November, 2019
18
October, 2019
14
February, 2023
10
April, 2020
9
March, 2020
6
April, 2018
4
May, 2023
4
November, 2020
3
December, 2019
Available data
1051
tsv
926
bam
919
bigWig
156
txt
110
fastq
7
tagAlign
6
bed broadPeak
6
bed narrowPeak
6
bigBed narrowPeak
6
csv
Organism
1316
Homo sapiens
Biosample type
1325
tissue
374
primary cell
138
in vitro differentiated cells
123
cell line
2
stem cell
Organ
458
connective tissue
400
adipose tissue
302
pancreas
174
liver
146
bone element
120
kidney
109
heart
21
brain
19
eye
13
blood vessel
13
vasculature
10
lung
7
musculature of body
4
artery
4
skeleton
3
epithelium
3
limb
1
nerve
1
spinal cord
Project
1261
AMP
47
KPMP
10
LungMap
7
T1D
Genome assembly (visualization)
920
GRCh38
920
hg19
Lab
1171
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
7
audit script error
Audit category:
1
inconsistent assembly
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
1325 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
ChIP-seq
MeRIP-seq
snDrop-seq
snATAC-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
4
liver
167
1
1
kidney
49
64
bone element
84
+ See 62 more…
See all biosamples
Download