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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1027total RNA-seq
  • 180single cell RNA-seq
  • 87RNA microarray
  • 16small RNA-seq
  • 7ChIP-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1snATAC-seq
Assay category
  • 1223Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 3control
  • 2narrow histone mark
  • 2nucleotide modification
Date released
  • 537February, 2021
  • 157August, 2021
  • 143May, 2020
  • 120July, 2018
  • 96August, 2017
  • 47July, 2019
  • 47September, 2023
  • 39May, 2021
  • 27May, 2022
  • 25February, 2020
  • 19November, 2019
  • 18October, 2019
  • 14February, 2023
  • 10April, 2020
  • 9March, 2020
  • 6April, 2018
  • 4May, 2023
  • 4November, 2020
  • 3December, 2019
Available data
  • 1051tsv
  • 926bam
  • 919bigWig
  • 156txt
  • 110fastq
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6csv
Organism
  • 1316Homo sapiens
Biosample type
  • 1325tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 123cell line
  • 2stem cell
Organ
  • 458connective tissue
  • 400adipose tissue
  • 302pancreas
  • 174liver
  • 146bone element
  • 120kidney
  • 109heart
  • 21brain
  • 19eye
  • 13blood vessel
  • 13vasculature
  • 10lung
  • 7musculature of body
  • 4artery
  • 4skeleton
  • 3epithelium
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1261AMP
  • 47KPMP
  • 10LungMap
  • 7T1D
Genome assembly (visualization)
  • 920GRCh38
  • 920hg19
Lab
  • 1171AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 12Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 1Bing Ren, UCSD
Audit category:
  • 85inconsistent ontology term
  • 7audit script error
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1325 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
ChIP-seq
MeRIP-seq
snDrop-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
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