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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
total RNA-seq
1
RNA microarray
Assay category
907
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
4
Transcription
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
224
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
988
bam
984
bed narrowPeak
859
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1452
Homo sapiens
Biosample type
1461
tissue
714
primary cell
543
cell line
256
in vitro differentiated cells
10
stem cell
Organ
244
brain
210
pancreas
204
heart
187
liver
179
kidney
120
blood vessel
120
vasculature
119
limb
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
42
nerve
37
eye
25
spleen
18
ureter
12
bone element
12
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1427
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
945
GRCh38
841
hg19
Lab
1262
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
1461 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
total RNA-seq
RNA microarray
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
kidney
27
75
13
6
1
1
1
heart left ventricle
35
2
3
4
1
1
1
body of pancreas
35
4
4
2
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