Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 972total RNA-seq
  • 826ChIP-seq
  • 234ATAC-seq
  • 171single cell RNA-seq
  • 156DNase-seq
  • 87RNA microarray
  • 27WGBS
  • 25snATAC-seq
  • 12Hi-C
  • 11RRBS
  • 7small RNA-seq
  • 5pCHi-C
  • 1FAIRE-seq
  • 1snDrop-seq
Assay category
  • 1150Transcription
  • 826DNA binding
  • 416DNA accessibility
  • 38DNA methylation
  • 123D chromatin structure
Target of assay
  • 568histone modification
  • 567histone
  • 293broad histone mark
  • 274narrow histone mark
  • 180control
  • 78transcription factor
  • 24RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 537February, 2021
  • 258August, 2017
  • 227August, 2021
  • 198October, 2019
  • 193May, 2020
  • 143June, 2019
  • 118July, 2018
  • 115May, 2019
  • 82November, 2017
  • 79April, 2019
  • 73October, 2018
  • 66February, 2023
  • 64May, 2022
  • 55July, 2019
  • 47September, 2023
  • 45December, 2017
  • 40May, 2024
  • 39November, 2019
  • 38May, 2021
  • 24November, 2018
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 12March, 2020
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 4September, 2017
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1769bam
  • 1637bigWig
  • 990tsv
  • 901bed narrowPeak
  • 532bigBed narrowPeak
  • 333fastq
  • 192tagAlign
  • 190bed broadPeak
  • 156bed bed3+
  • 155bigBed broadPeak
  • 152txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 8hic
  • 7bedpe bed3+
  • 5csv
Organism
  • 2526Homo sapiens
Biosample type
  • 2535tissue
  • 786primary cell
  • 662cell line
  • 282in vitro differentiated cells
  • 9stem cell
Organ
  • 532connective tissue
  • 473adipose tissue
  • 434pancreas
  • 349liver
  • 294heart
  • 290kidney
  • 194brain
  • 150bone element
  • 129blood vessel
  • 129vasculature
  • 119limb
  • 75musculature of body
  • 71artery
  • 53eye
  • 42nerve
  • 24spleen
  • 19lung
  • 18ureter
  • 15epithelium
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 2460AMP
  • 47KPMP
  • 19LungMap
  • 9T1D
Genome assembly (visualization)
  • 1723GRCh38
  • 1610hg19
Lab
  • 2213AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Kyle Gaulton, UCSD
  • 19Xin Sun, UCSD
Audit category:
  • 87inconsistent ontology term
  • 27inconsistent control
  • 8audit script error
Audit category:
  • 12missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2535 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans282495051141
adipose tissue382213
liver1651392013111
kidney4926756411611
bone element84
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego