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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
826
ChIP-seq
234
ATAC-seq
171
single cell RNA-seq
156
DNase-seq
87
RNA microarray
27
WGBS
25
snATAC-seq
12
Hi-C
11
RRBS
7
small RNA-seq
5
pCHi-C
1
FAIRE-seq
1
snDrop-seq
Assay category
1150
Transcription
826
DNA binding
416
DNA accessibility
38
DNA methylation
12
3D chromatin structure
Target of assay
568
histone modification
567
histone
293
broad histone mark
274
narrow histone mark
180
control
78
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
258
August, 2017
227
August, 2021
198
October, 2019
193
May, 2020
143
June, 2019
118
July, 2018
115
May, 2019
82
November, 2017
79
April, 2019
73
October, 2018
66
February, 2023
64
May, 2022
55
July, 2019
47
September, 2023
45
December, 2017
40
May, 2024
39
November, 2019
38
May, 2021
24
November, 2018
19
April, 2020
16
October, 2017
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1769
bam
1637
bigWig
990
tsv
901
bed narrowPeak
532
bigBed narrowPeak
333
fastq
192
tagAlign
190
bed broadPeak
156
bed bed3+
155
bigBed broadPeak
152
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
csv
Organism
2526
Homo sapiens
Biosample type
2535
tissue
786
primary cell
662
cell line
282
in vitro differentiated cells
9
stem cell
Organ
532
connective tissue
473
adipose tissue
434
pancreas
349
liver
294
heart
290
kidney
194
brain
150
bone element
129
blood vessel
129
vasculature
119
limb
75
musculature of body
71
artery
53
eye
42
nerve
24
spleen
19
lung
18
ureter
15
epithelium
8
skeleton
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
2460
AMP
47
KPMP
19
LungMap
9
T1D
Genome assembly (visualization)
1723
GRCh38
1610
hg19
Lab
2213
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
replication_type!
anisogenic
BIOSAMPLE
ASSAY
2535 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
282
49
50
5
1
1
4
1
adipose tissue
382
2
1
3
liver
165
139
20
1
3
1
1
1
kidney
49
26
75
64
11
6
1
1
bone element
84
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