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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1028total RNA-seq
  • 837ChIP-seq
  • 241ATAC-seq
  • 180single cell RNA-seq
  • 177DNase-seq
  • 87RNA microarray
  • 26WGBS
  • 24pCHi-C
  • 21snATAC-seq
  • 16Hi-C
  • 16small RNA-seq
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2RRBS
Assay category
  • 1224Transcription
  • 837DNA binding
  • 443DNA accessibility
  • 28DNA methylation
  • 163D chromatin structure
Target of assay
  • 592histone modification
  • 591histone
  • 308narrow histone mark
  • 283broad histone mark
  • 184control
  • 63transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 545February, 2021
  • 281August, 2017
  • 225August, 2021
  • 220October, 2019
  • 193May, 2020
  • 162June, 2019
  • 120July, 2018
  • 105May, 2019
  • 95February, 2023
  • 82November, 2017
  • 79April, 2019
  • 70July, 2019
  • 67October, 2018
  • 66May, 2022
  • 47September, 2023
  • 40March, 2020
  • 40May, 2024
  • 39May, 2021
  • 25February, 2020
  • 23October, 2017
  • 22November, 2018
  • 21November, 2019
  • 19April, 2020
  • 19December, 2017
  • 15May, 2023
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5January, 2021
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1814bam
  • 1701bigWig
  • 1073tsv
  • 897bed narrowPeak
  • 508bigBed narrowPeak
  • 334fastq
  • 238tagAlign
  • 212bed broadPeak
  • 204bed bed3+
  • 175bigBed broadPeak
  • 157txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2657Homo sapiens
Biosample type
  • 2666tissue
  • 914primary cell
  • 323in vitro differentiated cells
  • 199cell line
  • 7stem cell
Organ
  • 547connective tissue
  • 488adipose tissue
  • 474pancreas
  • 320liver
  • 303heart
  • 294kidney
  • 257brain
  • 158bone element
  • 121blood vessel
  • 121vasculature
  • 117limb
  • 79musculature of body
  • 68artery
  • 56eye
  • 43nerve
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2573AMP
  • 47KPMP
  • 27T1D
  • 19LungMap
Genome assembly (visualization)
  • 1769GRCh38
  • 1657hg19
Lab
  • 2322AMP-T2D consortium
  • 138Katalin Susztak, Upenn
  • 48Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 91inconsistent ontology term
  • 9audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2666 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans29271496146314
adipose tissue3822331
liver16610920123111
kidney4927756413211
bone element84
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