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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
837
ChIP-seq
241
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
87
RNA microarray
26
WGBS
24
pCHi-C
21
snATAC-seq
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1224
Transcription
837
DNA binding
443
DNA accessibility
28
DNA methylation
16
3D chromatin structure
Target of assay
592
histone modification
591
histone
308
narrow histone mark
283
broad histone mark
184
control
63
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
281
August, 2017
225
August, 2021
220
October, 2019
193
May, 2020
162
June, 2019
120
July, 2018
105
May, 2019
95
February, 2023
82
November, 2017
79
April, 2019
70
July, 2019
67
October, 2018
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2024
39
May, 2021
25
February, 2020
23
October, 2017
22
November, 2018
21
November, 2019
19
April, 2020
19
December, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
January, 2021
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1814
bam
1701
bigWig
1073
tsv
897
bed narrowPeak
508
bigBed narrowPeak
334
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2657
Homo sapiens
Biosample type
2666
tissue
914
primary cell
323
in vitro differentiated cells
199
cell line
7
stem cell
Organ
547
connective tissue
488
adipose tissue
474
pancreas
320
liver
303
heart
294
kidney
257
brain
158
bone element
121
blood vessel
121
vasculature
117
limb
79
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2573
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1769
GRCh38
1657
hg19
Lab
2322
AMP-T2D consortium
138
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
replication_type!
isogenic
BIOSAMPLE
ASSAY
2666 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
292
71
49
6
1
4
6
3
1
4
adipose tissue
382
2
3
3
1
liver
166
109
20
1
2
3
1
1
1
kidney
49
27
75
64
13
2
1
1
bone element
84
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